Installation.

1) Go to the emboss directory 
cd EMBOSS-6.1.0

2) make new directory embassy if it does not exist already.
mkdir embassy

3) Go into that directory
cd embassy

4) unzip and untar the file
gunzip MSE-3.0.0.tar.gz
tar xvf MSE-3.0.0.tar

5) go into the mse directory
cd MSE-3.0.0

6) configure and compile
./configure (use same options as you used to compile emboss)
make
make install

